
Computational life science consultant
San Francisco Bay Area

Computational life science consultant
San Francisco Bay Area
Expertise and patents in computational chemistry, similarity metrics in chemistry (recently extended into -omics), and pattern recognition. Multidimensional data exploration and optimization is a central theme. Interactive data mining, algorithm development, cheminformatics and bioinformatics.
Computational life science includes social behavior of homo sapiens.
QSAR, virtual libraries of chemicals, visualization of high dimensional systems, application of similarity to design drug discovery processes. Data mining, algorithms, recursive optimization processes. Establishing online identity.
(Sole Proprietorship; Myself Only; Biotechnology industry)
February 2006 — Present (3 years 10 months)
Protein and gene expression mining, quantitative structure-activity modeling, workflow development in KNIME open source platform, chemical compound selection for drug discovery, associated software development in Python, Java, C and SPL.
(Privately Held; Biotechnology industry)
2006 — 2008 (2 years )
(Public Company; 201-500 employees; TRPS; Biotechnology industry)
1986 — 2006 (20 years )
Produced CoMFA QSAR module in Sybyl, created algorithms for chemical diversity analysis patented new approaches for virtual compound libraries and for visualization of 1000-D chemical space. Tasked with discovering new corporate opportunities and with prototyping the collaborations and algorithms needed to pursue them.
(Educational Institution; 1-10 employees; Research industry)
1974 — 1986 (12 years )
Monte Carlo models of long range transport of air polutants, tied to historical data of emissions and visibility.
1970 — 1980
Hiking, reading, computers, politics, poker, grandchildren, math and science.
KNIME
American Chemical Society
Invited talks at Gordon Conference, Keystone conference.
Three patents: molecular similarity, searching virtual chemical libraries, and 2-D interactive visualization of 1000-D data.